The investigation of changes in arrangement of water molecules and salt ions around the DNA molecule in melting process: A Molecular Dynamics Simulation Study
We have performed molecular dynamics simulation on B-DNA duplex (CGCGAATTGCGC) at different temperatures.The DNA was immerged in a salt-water medium with 1 M NaCl concentration.At each temperature the radial distribution function is calculated for different atoms of DNA molecule.Almost for all atoms of the DNA by double helix single-stranded transi